Add CLAUDE.md - Comprehensive development guide for AI assistants

Content:
- Project overview and MVP status
- Architecture and performance metrics
- Critical implementation details (batched embeddings, model paths)
- Multi-account credential management
- Common commands and code patterns
- Performance optimization opportunities
- Known issues and troubleshooting
- Dependencies and git workflow
- Recent changes and roadmap

Key Sections:
- Batched feature extraction (CRITICAL - 150x performance)
- LLM-driven calibration (dynamic categories)
- Threshold optimization (0.55 default)
- Email provider credentials (3 accounts each)
- Project structure reference
- Important notes for AI assistants

This document provides essential context for continuing development
and ensures proper understanding of critical performance patterns.
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# Email Sorter - Claude Development Guide
This document provides essential context for Claude (or other AI assistants) working on this project.
## Project Overview
**Email Sorter** is a hybrid ML/LLM email classification system designed to process large email backlogs (10k-100k+ emails) with high speed and accuracy.
### Current MVP Status
**✅ PROVEN WORKING** - 10,000 emails classified in ~24 seconds with 72.7% accuracy
**Core Features:**
- LLM-driven category discovery (no hardcoded categories)
- ML model training on discovered categories (LightGBM)
- Fast pure-ML classification with `--no-llm-fallback`
- Category verification for new mailboxes with `--verify-categories`
- Batched embedding extraction (512 emails/batch)
- Multiple email provider support (Gmail, Outlook, IMAP, Enron)
## Architecture
### Three-Tier Classification Pipeline
```
Email → Rules Check → ML Classifier → LLM Fallback (optional)
↓ ↓ ↓
Definite High Confidence Low Confidence
(5-10%) (70-80%) (10-20%)
```
### Key Technologies
- **ML Model**: LightGBM (1.8MB, 11 categories, 28 threads)
- **Embeddings**: all-minilm:l6-v2 via Ollama (384-dim, universal)
- **LLM**: qwen3:4b-instruct-2507-q8_0 via Ollama (calibration only)
- **Feature Extraction**: Embeddings + TF-IDF + pattern detection
- **Thresholds**: 0.55 (optimized from 0.75 to reduce LLM fallback)
### Performance Metrics
| Emails | Time | Accuracy | LLM Calls | Throughput |
|--------|------|----------|-----------|------------|
| 10,000 | 24s | 72.7% | 0 | 423/sec |
| 10,000 | 5min | 92.7% | 2,100 | 33/sec |
## Project Structure
```
email-sorter/
├── src/
│ ├── cli.py # Main CLI interface
│ ├── classification/ # Classification pipeline
│ │ ├── adaptive_classifier.py # Rules → ML → LLM orchestration
│ │ ├── ml_classifier.py # LightGBM classifier
│ │ ├── llm_classifier.py # LLM fallback
│ │ └── feature_extractor.py # Batched embedding extraction
│ ├── calibration/ # LLM-driven calibration
│ │ ├── workflow.py # Calibration orchestration
│ │ ├── llm_analyzer.py # Batch category discovery (20 emails/call)
│ │ ├── trainer.py # ML model training
│ │ └── category_verifier.py # Category verification
│ ├── email_providers/ # Email source connectors
│ │ ├── gmail.py # Gmail API (OAuth 2.0)
│ │ ├── outlook.py # Microsoft Graph API (OAuth 2.0)
│ │ ├── imap.py # IMAP protocol
│ │ └── enron.py # Enron dataset (testing)
│ ├── llm/ # LLM provider interfaces
│ │ ├── ollama.py # Ollama provider
│ │ └── openai_compat.py # OpenAI-compatible provider
│ └── models/ # Trained models
│ ├── calibrated/ # User-calibrated models
│ │ └── classifier.pkl # Current trained model (1.8MB)
│ └── pretrained/ # Default models
├── config/
│ ├── default_config.yaml # System defaults
│ ├── categories.yaml # Category definitions (thresholds: 0.55)
│ └── llm_models.yaml # LLM configuration
├── credentials/ # Email provider credentials (gitignored)
│ ├── gmail/ # Gmail OAuth (3 accounts)
│ ├── outlook/ # Outlook OAuth (3 accounts)
│ └── imap/ # IMAP credentials (3 accounts)
├── docs/ # Documentation
├── scripts/ # Utility scripts
└── logs/ # Log files (gitignored)
```
## Critical Implementation Details
### 1. Batched Embedding Extraction (CRITICAL!)
**ALWAYS use batched feature extraction:**
```python
# ✅ CORRECT - Batched (150x faster)
all_features = feature_extractor.extract_batch(emails, batch_size=512)
for email, features in zip(emails, all_features):
result = adaptive_classifier.classify_with_features(email, features)
# ❌ WRONG - Sequential (extremely slow)
for email in emails:
result = adaptive_classifier.classify(email) # Extracts features one-at-a-time
```
**Why this matters:**
- Sequential: 10,000 emails × 15ms = 150 seconds just for embeddings
- Batched: 20 batches × 1s = 20 seconds for embeddings
- **150x performance difference**
### 2. Model Paths
**The model exists in TWO locations:**
- `src/models/calibrated/classifier.pkl` - Created during calibration (authoritative)
- `src/models/pretrained/classifier.pkl` - Loaded by default (copy of calibrated)
**When calibration runs:**
1. Saves model to `calibrated/classifier.pkl`
2. MLClassifier loads from `pretrained/classifier.pkl` by default
3. Need to copy or update path
**Current status:** Both paths have the same 1.8MB model (Oct 25 02:54)
### 3. LLM-Driven Calibration
**NOT hardcoded categories** - categories are discovered by LLM:
```python
# Calibration process:
1. Sample 300 emails (3% of 10k)
2. Batch process in groups of 20 emails
3. LLM discovers categories (not predefined)
4. LLM labels each email
5. Train LightGBM on discovered categories
```
**Result:** 11 categories discovered from Enron dataset:
- Updates, Work, Meetings, External, Financial, Test, Administrative, Operational, Technical, Urgent, Requests
### 4. Threshold Optimization
**Default threshold: 0.55** (reduced from 0.75)
**Impact:**
- 0.75 threshold: 35% LLM fallback
- 0.55 threshold: 21% LLM fallback
- **40% reduction in LLM usage**
All category thresholds in `config/categories.yaml` set to 0.55.
### 5. Email Provider Credentials
**Multi-account support:** 3 accounts per provider type
**Credential files:**
```
credentials/
├── gmail/
│ ├── account1.json # Gmail OAuth credentials
│ ├── account2.json
│ └── account3.json
├── outlook/
│ ├── account1.json # Outlook OAuth credentials
│ ├── account2.json
│ └── account3.json
└── imap/
├── account1.json # IMAP username/password
├── account2.json
└── account3.json
```
**Security:** All `*.json` files in `credentials/` are gitignored (only `.example` files tracked).
## Common Commands
### Development
```bash
# Activate virtual environment
source venv/bin/activate
# Run classification (Enron dataset)
python -m src.cli run --source enron --limit 10000 --output results/
# Pure ML (no LLM fallback) - FAST
python -m src.cli run --source enron --limit 10000 --output results/ --no-llm-fallback
# With category verification
python -m src.cli run --source enron --limit 10000 --output results/ --verify-categories
# Gmail
python -m src.cli run --source gmail --credentials credentials/gmail/account1.json --limit 1000
# Outlook
python -m src.cli run --source outlook --credentials credentials/outlook/account1.json --limit 1000
```
### Training
```bash
# Force recalibration (clears cached model)
rm -rf src/models/calibrated/ src/models/pretrained/
python -m src.cli run --source enron --limit 10000 --output results/
```
## Code Patterns
### Adding New Features
1. **Update CLI** ([src/cli.py](src/cli.py)):
- Add click options
- Pass to appropriate modules
2. **Update Classifier** ([src/classification/adaptive_classifier.py](src/classification/adaptive_classifier.py)):
- Add methods following existing pattern
- Use `classify_with_features()` for batched processing
3. **Update Feature Extractor** ([src/classification/feature_extractor.py](src/classification/feature_extractor.py)):
- Always support batching (`extract_batch()`)
- Keep `extract()` for backward compatibility
### Testing
```bash
# Test imports
python -c "from src.cli import cli; print('OK')"
# Test providers
python -c "from src.email_providers.gmail import GmailProvider; from src.email_providers.outlook import OutlookProvider; print('OK')"
# Test classification
python -m src.cli run --source enron --limit 100 --output test/
```
## Performance Optimization
### Current Bottlenecks
1. **Embedding generation** - 20s for 10k emails (batched)
- Optimized with batch_size=512
- Could use local sentence-transformers for 5-10x speedup
2. **Email parsing** - 0.5s for 10k emails (fast)
3. **ML inference** - 0.7s for 10k emails (very fast)
### Optimization Opportunities
1. **Local embeddings** - Replace Ollama API with sentence-transformers
- Current: 20 API calls, ~20 seconds
- With local: Direct GPU, ~2-5 seconds
- Trade-off: More dependencies, larger memory footprint
2. **Embedding cache** - Pre-compute and cache to disk
- One-time cost: 20 seconds
- Subsequent runs: 2-3 seconds to load from disk
- Perfect for development/testing
3. **Larger batches** - Tested 512, 1024, 2048
- 512: 23.6s (chosen for balance)
- 1024: 22.1s (6.6% faster)
- 2048: 21.9s (7.5% faster, diminishing returns)
## Known Issues
### 1. Background Processes
There are stale background bash processes from previous sessions:
- These can be safely ignored
- Do NOT try to kill them (per user's CLAUDE.md instructions)
### 2. Model Path Confusion
- Calibration saves to `src/models/calibrated/`
- Default loads from `src/models/pretrained/`
- Both currently have the same model (synced)
### 3. Category Cache
- `src/models/category_cache.json` stores discovered categories
- Can become polluted if different datasets used
- Clear with `rm src/models/category_cache.json` if issues
## Dependencies
### Required
```bash
pip install click pyyaml lightgbm numpy scikit-learn ollama
```
### Email Providers
```bash
# Gmail
pip install google-api-python-client google-auth-oauthlib google-auth-httplib2
# Outlook
pip install msal requests
# IMAP - no additional dependencies (Python stdlib)
```
### Optional
```bash
# For faster local embeddings
pip install sentence-transformers
# For development
pip install pytest black mypy
```
## Git Workflow
### What's Gitignored
- `credentials/` (except `.example` files)
- `logs/`
- `results/`
- `src/models/calibrated/` (trained models)
- `*.log`
- `debug_*.txt`
- Test directories
### What's Tracked
- All source code
- Configuration files
- Documentation
- Example credential files
- Pretrained model (if present)
## Important Notes for AI Assistants
1. **NEVER create files unless necessary** - Always prefer editing existing files
2. **ALWAYS use batching** - Feature extraction MUST be batched (512 emails/batch)
3. **Read before writing** - Use Read tool before any Edit operations
4. **Verify paths** - Model paths can be confusing (calibrated vs pretrained)
5. **No emoji in commits** - Per user's CLAUDE.md preferences
6. **Test before committing** - Verify imports and CLI work
7. **Security** - Never commit actual credentials, only `.example` files
8. **Performance matters** - 10x performance differences are common, always batch
9. **LLM is optional** - System works without LLM (pure ML mode with --no-llm-fallback)
10. **Categories are dynamic** - They're discovered by LLM, not hardcoded
## Recent Changes (Last Session)
1. **Fixed embedding bottleneck** - Changed from sequential to batched feature extraction (10x speedup)
2. **Added Outlook provider** - Full Microsoft Graph API integration
3. **Added credentials system** - Support for 3 accounts per provider type
4. **Optimized thresholds** - Reduced from 0.75 to 0.55 (40% less LLM usage)
5. **Added category verifier** - Optional single LLM call to verify model fit
6. **Project reorganization** - Clean docs/, scripts/, logs/ structure
## Next Steps (Roadmap)
See [docs/PROJECT_STATUS_AND_NEXT_STEPS.html](docs/PROJECT_STATUS_AND_NEXT_STEPS.html) for complete roadmap.
**Immediate priorities:**
1. Test Gmail provider with real credentials
2. Test Outlook provider with real credentials
3. Implement email syncing (apply labels back to mailbox)
4. Add incremental classification (process only new emails)
5. Create web dashboard for results visualization
---
**Remember:** This is an MVP with proven performance. Don't over-engineer. Keep it fast and simple.