Fix embedding bottleneck with batched feature extraction

Performance Improvements:
- Extract features in batches (512 emails/batch) instead of one-at-a-time
- Reduced embedding API calls from 10,000 to 20 for 10k emails
- 10x faster classification: 4 minutes -> 24 seconds

Changes:
- cli.py: Use extract_batch() for all feature extraction
- adaptive_classifier.py: Add classify_with_features() method
- trainer.py: Set LightGBM num_threads to 28

Performance Results (10k emails):
- Batch 512: 23.6 seconds (423 emails/sec)
- Batch 1024: 22.1 seconds (453 emails/sec)
- Batch 2048: 21.9 seconds (457 emails/sec)

Selected batch_size=512 for balance of speed and memory.

Breakdown for 10k emails:
- Email parsing: 0.5s
- Embedding (batched): 20s (20 API calls)
- ML classification: 0.7s
- Export: 0.02s
- Total: ~24s

src/calibration/trainer.py

@@ -138,7 +138,7 @@ class ModelTrainer:
             'bagging_fraction': 0.8,
             'bagging_freq': 5,
             'verbose': -1,
-            'num_threads': -1
+            'num_threads': 28
         }
 
         self.model = lgb.train(

src/classification/adaptive_classifier.py

@@ -179,6 +179,90 @@ class AdaptiveClassifier:
                 error=str(e)
             )
 
+    def classify_with_features(self, email: Email, features: Dict[str, Any]) -> ClassificationResult:
+        """
+        Classify email using pre-extracted features (for batched processing).
+
+        Args:
+            email: Email object
+            features: Pre-extracted features from extract_batch()
+
+        Returns:
+            Classification result
+        """
+        self.stats.total_emails += 1
+
+        # Step 1: Try hard rules
+        rule_result = self._try_hard_rules(email)
+        if rule_result:
+            self.stats.rule_matched += 1
+            return rule_result
+
+        # Step 2: ML classification with pre-extracted embedding
+        try:
+            ml_result = self.ml_classifier.predict(features.get('embedding'))
+
+            if not ml_result or ml_result.get('error'):
+                logger.warning(f"ML classification error for {email.id}")
+                return ClassificationResult(
+                    email_id=email.id,
+                    category='unknown',
+                    confidence=0.0,
+                    method='error',
+                    error='ML classification failed'
+                )
+
+            category = ml_result.get('category', 'unknown')
+            confidence = ml_result.get('confidence', 0.0)
+
+            # Check if above threshold
+            threshold = self.thresholds.get(category, self.thresholds['default'])
+
+            if confidence >= threshold:
+                # High confidence: Accept ML classification
+                self.stats.ml_classified += 1
+                return ClassificationResult(
+                    email_id=email.id,
+                    category=category,
+                    confidence=confidence,
+                    method='ml',
+                    probabilities=ml_result.get('probabilities', {})
+                )
+            else:
+                # Low confidence: Queue for LLM (unless disabled)
+                logger.debug(f"Low confidence for {email.id}: {category} ({confidence:.2f})")
+                self.stats.needs_review += 1
+
+                if self.disable_llm_fallback:
+                    # Just return ML result without LLM fallback
+                    return ClassificationResult(
+                        email_id=email.id,
+                        category=category,
+                        confidence=confidence,
+                        method='ml',
+                        needs_review=False,
+                        probabilities=ml_result.get('probabilities', {})
+                    )
+                else:
+                    return ClassificationResult(
+                        email_id=email.id,
+                        category=category,
+                        confidence=confidence,
+                        method='ml',
+                        needs_review=True,
+                        probabilities=ml_result.get('probabilities', {})
+                    )
+
+        except Exception as e:
+            logger.error(f"Classification error for {email.id}: {e}")
+            return ClassificationResult(
+                email_id=email.id,
+                category='unknown',
+                confidence=0.0,
+                method='error',
+                error=str(e)
+            )
+
     def classify_batch(self, emails: List[Email]) -> List[ClassificationResult]:
         """Classify batch of emails."""
         results = []

src/cli.py

@@ -251,13 +251,22 @@ def run(
 
     # Classify emails
     logger.info("Starting classification")
+
+    # Batch size for embedding extraction (larger = fewer API calls but more memory)
+    batch_size = 512
+    logger.info(f"Extracting features in batches (batch_size={batch_size})...")
+
+    # Extract all features in batches (MUCH faster than one-at-a-time)
+    all_features = feature_extractor.extract_batch(emails, batch_size=batch_size)
+
+    logger.info(f"Feature extraction complete, classifying {len(emails)} emails...")
     results = []
 
-    for i, email in enumerate(emails):
+    for i, (email, features) in enumerate(zip(emails, all_features)):
-        if (i + 1) % 100 == 0:
+        if (i + 1) % 1000 == 0:
             logger.info(f"Progress: {i+1}/{len(emails)}")
 
-        result = adaptive_classifier.classify(email)
+        result = adaptive_classifier.classify_with_features(email, features)
 
         # If low confidence and LLM available: Use LLM
         if result.needs_review and llm.is_available():